Fundamentals of Multivariate Modeling (Spring 2018; EPSY 905; KU)
Course Information
Brief Course Description
In this course, contemporary approaches to multivariate analysis using mixed-effects models estimated with maximum likelihood and Bayesian methods are presented. Classical topics in multivariate analysis including multivariate analysis of variance and exploratory factor analysis, are covered in the context of mixed-effects models, preparing students for subsequent courses and research that use such model-based methods. Topics include extensions of linear models (regression and analysis of variance) for non-normal data with link functions, introductory matrix algebra, missing data modeling techniques, models for repeated measures data, and path analysis models for multivariate regression evaluating both moderation and mediation effects.
The course will use the R statistical package with R Studio and a set of packages including the EPSY905R Package (Templin, 2018) for all computational and data analysis work involved in the course.
For all other specific information regarding general course policies, course evaluation rubrics, and grading systems, please see the course syllabus at the link below.
Tentatively, the course will be held in a flipped format. Students will watch lecture videos during the week before class. Class time will be spent with Q & A about the video contents and then an exercise relating to the topic or homework using R.
All readings will be made available via campus OneDrive shared folder. Please email me for an invitation to this folder.
Course Materials
- Syllabus: EPSY 905 Spring 2018 Syllabus
- YouTube Video Channel: https://www.youtube.com/channel/UC6WctsOhVfGW1D9NZUH1xFg?view_as=subscriber
Helpful R Links and Resources
16 Jan: Introduction to R
Videos to Watch Prior to Lecture
None
Quizzes To Take Before Class:
None
In-Class Lecture Materials:
In-Class Lecture Videos:
- Part 1: https://youtu.be/VgVIzqAXL2g
- Part 2: https://youtu.be/RcBJ1Z8j3-c
- Part 3: https://youtu.be/GKnJiFtVkY0
Active Homework Assignments
- Homework #1 (Due 29 Jan): mv18epsy905_HW1.zip
Additional Links and Information
- YouTube Channel
- Note: Anonymous questions
can be submitted in class
forum on Blackboard:
https://courseware.ku.edu
23 Jan: General Linear Models
Videos to Watch Prior to Lecture
- Introduction/Descriptive Statistics: https://youtu.be/qIOF0XxRpJw
- General Linear Models: https://youtu.be/rLAVYdFggB8
Slides and Files From Videos
- Introduction/Descriptive Statistics:
- Slides: mv18epsy905_01BasicStats.pdf
- R Syntax: mv16epsy905_01BasicStats.R.zip
- General Linear Models:
- Slides: mv18epsy905_02GLM.pdf
- R Syntax: mv18epsy905_02GLM.R.zip
Optional Readings on Class OneDrive Folder:
- Hoffman (2015), Chapter 2
Quizzes To Take Before Class:
- Quiz 1 (in Blackboard: https://courseware.ku.edu)
In-Class Lecture Materials:
- R Example: mv18epsy905_lecture02.nb.html
- Data: mv18epsy905_lecture02.csv
In-Class Lecture Videos:
- Video 1: https://youtu.be/vX7QwavaSzM
- Video 2: https://youtu.be/nqLy0qJw1Wc
Active Homework Assignments
- Homework #1 (Due 29 Jan): mv18epsy905_HW1.zip
Additional Links and Information
None
30 Jan: Interactions in GLMs
Videos to Watch Prior to Lecture
- Interactions in GLMs: https://youtu.be/woqqrh7BfVY
Slides and Files From Videos
- Interactions
- Slides: mv18epsy905_Interactions.pdf
- R Syntax: mv18epsy905_Interactions.R
Optional Readings on Class OneDrive Folder:
- Hoffman (2015), Chapter 2
Quizzes To Take Before Class:
- Quiz 2 (in Blackboard: https://courseware.ku.edu)
In-Class Lecture Materials:
- R Notebook: mv18epsy905_lecture03.nb.html
- Data in CSV Format: mv18epsy905_lecture03.csv
In-Class Lecture Videos:
- Interactions: https://youtu.be/g73sA4lrZEI
Active Homework Assignments
- Homework #2 (Due 12 Feb): http://www.hofflinhomeworkhub.com
Additional Links and Information
None
06 Feb: Interactions, Continued
Videos to Watch Prior to Lecture
- None
Slides and Files From Videos
- None
Optional Readings on Class OneDrive Folder:
- None
Quizzes To Take Before Class:
- Quiz 3 (in Blackboard: https://courseware.ku.edu)
In-Class Lecture Materials:
- R Syntax: HW2.R
- Data File: HW02_4228367.csv
- OneNote Notes: Class 6 Feb.pdf
In-Class Lecture Videos:
- Lecture Video: https://youtu.be/Y3IsrQ_gboE
Active Homework Assignments
- Homework #2 (Due 12 Feb): http://www.hofflinhomeworkhub.com
Additional Links and Information
- Lectures from Previous Courses:
- 2012, University of Nebraska-Lincoln:
- 2016, University of Kansas:
13 Feb: Distributions and Estimation
Videos to Watch Prior to Lecture
- Distributions: https://youtu.be/DTsPlNBF9aE
- Least Squares: https://youtu.be/zYMkcSrYnGQ
Slides and Files From Videos
- Distributions:
- Lecture Slides: mv18epsy905_lecture04.pdf
- R Syntax: mv18epsy905_04Distributions.R
- Least Squares:
- Lecture Slides: mv18epsy905_05LeastSquares.pdf
- R Syntax: mv18epsy905_05LeastSquares.R
Optional Readings on Class OneDrive Folder:
- Kutner et al. (2005): Appendix A and Ch. 1
- Enders (2010): Ch. 3
Quizzes To Take Before Class:
- Quiz 4 (in Blackboard: https://courseware.ku.edu)
In-Class Lecture Materials:
- Maximum Likelihood
- Lecture Slides:
mv18epsy905_06MaximumLikelihood.pdf - R Syntax: mv18epsy905_06MaximumLikelihood.R
- Lecture Slides:
In-Class Lecture Videos:
- Maximum Likelihood Lecture:
- Part 1: https://youtu.be/kCVycHdqWXM
- Part 2: https://youtu.be/RjdeqqIfGDs
- Part 3: https://youtu.be/tSw1AGcXxBI
Active Homework Assignments
- None
Additional Links and Information
- None
20 Feb: Generalized Linear Models
Videos to Watch Prior to Lecture
- Introduction to Generalized Linear Models: https://youtu.be/TCEIuqZaEg8
- Note: watch until 57 minutes in…then move to lecture video below.
Slides and Files From Videos
- Introduction to Generalized Linear Models:
Optional Readings on Class OneDrive Folder:
- Enders (2010) ch. 3 (ML)
- Azen and Walker (2011) chs. 2 & 6 (GLMs)
- Atkins and Gallop (2007)
- Cohen, Cohen, West, and Aiken (2002)
Quizzes To Take Before Class:
- Quiz 5 (in Blackboard: https://courseware.ku.edu)
In-Class Lecture Materials:
- Note: there will be no in-class lecture on Tuesday, February 20th. Please watch the video in the In-Class Lecture Videos section.
- Logistic Regression Example:
- Slides: mv18epsy905_07aLogisticRegression.pdf
- R Syntax: mv18epsy905_07aLogisticRegression.R
- Data: ologit.csv
In-Class Lecture Videos:
- Logistic Regression Example: https://youtu.be/hp56KaZSasE
Active Homework Assignments
- Homework #3 (Due March 5): http://www.hofflinhomeworkhub.com
Additional Links and Information
13 Mar: Matrix Algebra and MVN
Videos to Watch Prior to Lecture
- None
Slides and Files From Videos
- None
Optional Readings on Class OneDrive Folder:
- Johnson & Wichern (2002) chs. 2, 3, and 4.
Quizzes To Take Before Class:
- None
In-Class Lecture Materials:
- Matrix Algebra:
- Slides: mv18epsy905_Matrices.pdf
- R Syntax: mv18epsy905_MatrixAlgebra.R
- Multivariate Normal Distribution:
- Slides: mv18epsy905_lectureMVN.pdf
- R Syntax: mv18epsy905_MVN.R
In-Class Lecture Videos:
- Forthcoming after class
Active Homework Assignments
- Homework #3 (Due March 5): http://www.hofflinhomeworkhub.com
Additional Links and Information
- None
27 Mar: Multivariate Linear Models
Videos to Watch Prior to Lecture
- Introduction to Multivariate Linear Models: https://youtu.be/J1dd009Dj40
- Assessment of Absolute Model Fit in Multivariate Linear Models: https://youtu.be/CPpRJa4JAj8
- Robust ML in Multivariate Linear Models: https://youtu.be/cS8OeGb9wKI
Slides and Files From Videos
- Introduction to Multivariate Linear Models
- Assessment of Absolute Model Fit in Multivariate Linear Models:
- Robust ML in Multivariate Linear Models:
Optional Readings on Class OneDrive Folder:
- None
Quizzes To Take Before Class:
- None
In-Class Lecture Materials:
- Multivariate Models with Predictors:
In-Class Lecture Videos:
- Part 1: https://youtu.be/ujkuw9i35pI
- Part 2: https://youtu.be/Tz_dkLjzuaU
- Part 3: https://youtu.be/1vbxvo7cPL0
Active Homework Assignments
- Homework #4 (Due April 9th; Will be posted March 27): http://www.hofflinhomeworkhub.com
Additional Links and Information
- Forthcoming
03 Apr: Path Analysis
Videos to Watch Prior to Lecture
- Path Analysis: https://youtu.be/ZOlAWVrhfuc
Slides and Files From Videos
- Path Analysis:
- Slides: mv18epsy905_PathAnalysis.pdf
- R Syntax: mv18epsy905_PathAnalysis.R
Optional Readings on Class OneDrive Folder:
- Kline (2005) chs. 5, 6
Quizzes To Take Before Class:
- Quiz 8 (in Blackboard: https://courseware.ku.edu)
In-Class Lecture Materials:
- None
In-Class Lecture Videos:
- Part 1: https://youtu.be/8PZtTVo8ygI
- Part 2: https://youtu.be/aAdvZTzt5BM
Active Homework Assignments
- Homework #4 (Due April 9th): http://www.hofflinhomeworkhub.com
Additional Links and Information
- Forthcoming
10 Apr: Mixed Models
Videos to Watch Prior to Lecture
- Mixed Models and REML: https://youtu.be/OZsgDXqXZxE
Slides and Files From Videos
- Mixed Models and REML:
- Slides: mv18epsy905_MixedModels.pdf
- R Syntax: mv18epsy905_MixedModels.R
Optional Readings on Class OneDrive Folder:
- None
Quizzes To Take Before Class:
- Quiz 9 (in Blackboard: https://courseware.ku.edu)
In-Class Lecture Materials:
- None
In-Class Lecture Videos:
- Part 1: https://youtu.be/BZY7BHuNLJ4
- Part 2: https://youtu.be/_LPk3IqCLrw
- Part 3: https://youtu.be/lmyqZhzN4SE
Active Homework Assignments
- Homework #5 (Due April 30th): http://www.hofflinhomeworkhub.com
Additional Links and Information
- None
17 Apr: Repeated Measures
Videos to Watch Prior to Lecture
- Repeated Measures: https://youtu.be/2NxOYvgDFjQ
Slides and Files From Videos
- Repeated Measures:
- Slides: mv18epsy905_RepeatedMeasures.pdf
- R Syntax: mv18epsy905_RepeatedMeasures.R
Optional Readings on Class OneDrive Folder:
- Maxwell & Delaney (2004) ch. 12-15
- Wright (1998; shows how Mixed Models can give MANOVA test statistics)
Quizzes To Take Before Class:
- Quiz 10 (in Blackboard: https://courseware.ku.edu)
In-Class Lecture Materials:
- None
In-Class Lecture Videos:
- None (no class)
Active Homework Assignments
- Homework #5 (Due April 30th): http://www.hofflinhomeworkhub.com
Additional Links and Information
- None
24 Apr: Bayesian and MCMC
Videos to Watch Prior to Lecture
- None
Slides and Files From Videos
- None
Optional Readings on Class OneDrive Folder:
- None
Quizzes To Take Before Class:
- None
In-Class Lecture Materials:
- Introduction to Bayesian:
- Slides: mv18epsy905_Bayesian.pdf
- R Syntax: mv18epsy905_Bayesian.R
- Additional Data: iqdata.csv
In-Class Lecture Videos:
- Forthcoming after class
Active Homework Assignments
- None
Additional Links and Information
- To follow syntax, download JAGS from http://mcmc-jags.sourceforge.net
Extra Content: Missing Data and MI
Videos to Watch Prior to Lecture
- None
Slides and Files From Videos
- None
Optional Readings on Class OneDrive Folder:
- Enders (2010), Ch. 4, 7, 8, 9
Quizzes To Take Before Class:
- None
In-Class Lecture Materials:
- Lecture Slides: mv16epsy905_lecture11.pdf
- R Files:
- Example Data: mv16epsy905_lecture11.csv
- Syntax: mv16epsy905_lecture11.R
- R Markdown: mv16epsy905_lecture11.html
In-Class Lecture Videos:
- Part 1 (2016): https://youtu.be/NFb8DcXCSxY
- Part 2 (2016): https://youtu.be/UUGIlXkEnrg
Active Homework Assignments
- None
Additional Links and Information
- None
Extra Content: PCA and EFA
Videos to Watch Prior to Lecture
- None
Slides and Files From Videos
- None
Optional Readings on Class OneDrive Folder:
- Johnson & Wichern (2002), Chs. 8 & 9
Quizzes To Take Before Class:
- None
In-Class Lecture Materials:
- Lecture Slides: mv16epsy905_lecture13.pdf
- R Files:
- Example Data (part 1): mv16epsy905_lecture13a.csv
- Example Data (part 2): mv16epsy905_lecture13b.csv
- Syntax: mv16epsy905_lecture13.R
- R Markdown: mv16epsy905_lecture13.html
In-Class Lecture Videos:
- Part 1 (from 2016): https://youtu.be/vFktlubZ9i8
- Part 2 (from 2016): https://youtu.be/SW-UzbOdfks
Active Homework Assignments
- Homework #7 (Due May 8th): http://www.hofflinhomeworkhub.com
Additional Links and Information
- Forthcoming
Extra Content: Classification and Clustering
Videos to Watch Prior to Lecture
- None
Slides and Files From Videos
- None
Optional Readings on Class OneDrive Folder:
- Vermunt & Magidson (2002)
- McCutcheon (2002)
Quizzes To Take Before Class:
- None
In-Class Lecture Materials:
- Lecture Slides: mv16epsy905_lecture14.pdf
- R Files:
- Syntax: mv16epsy905_lecture14.R
- R Markdown: mv16epsy905_lecture14.html
In-Class Lecture Videos:
- Part 1 (2016): https://youtu.be/zRmc-0ZSJr0
- Part 2 (2016): https://youtu.be/HwC80KLQrMk
Active Homework Assignments
- None
Additional Links and Information
- None
Homework Schedule
Note: All homework assignments are due at 11:59pm of the date noted below.